PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01230.1_g00011.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 236aa    MW: 25487.3 Da    PI: 8.8586
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01230.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.41.8e-393289562
                   zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                             +l+cprCdstntkfCyynnyslsqPryfCk+C+ryWtkGG+lrn+PvGgg+rknk+s+
  Rsa1.0_01230.1_g00011.1 32 SLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCKRYWTKGGTLRNIPVGGGCRKNKRST 89
                             689****************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-302686IPR003851Zinc finger, Dof-type
PfamPF027017.1E-343387IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3013387IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103571IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGCPSNPPHL DHEQKKPSPA TGAARPQPPE LSLRCPRCDS TNTKFCYYNN YSLSQPRYFC  60
KSCKRYWTKG GTLRNIPVGG GCRKNKRSTS SATRSLRTTP EPASHDGKAF SAASFGGFGN  120
NEHIDLSLAF ALLNKQPPGS SSQLGFPSEF GSSHQSGMES VFGTSQQKEN TGYAFGNGSS  180
GLDMAMSDPN KVLWGFPWQM NGEMNMGGGG GGHVDHIDSG REIWTNMNYI NSGALM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2347370.0AC234737.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126620.11e-163PREDICTED: dof zinc finger protein DOF5.3-like
SwissprotQ84TE91e-138DOF53_ARATH; Dof zinc finger protein DOF5.3
TrEMBLA0A078F7571e-164A0A078F757_BRANA; BnaA02g06470D protein
STRINGBra020261.1-P1e-163(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61321845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60200.11e-126TARGET OF MONOPTEROS 6